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igniteIQ

igniteIQ is a software platform that streamlines the extraction of clinically-relevant information from a wide range of PDF documents and images, enabling users to access discrete data for registries, analytics, and research by automatically extracting text from unstructured and semi-structured clinically-relevant documents. The extracted data undergoes a comprehensive review and curation process led by in-house, experienced precision medicine experts, ensuring that the extracted information is reliable and trustworthy.

Reduce the overhead associated with data extraction and transformation.

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Solution Features

Unstructured Data Extraction

Automatically extract and convert text from unstructured and semi-structured clinically-relevant documents, such as NGS reports and pathology reports.

Quality Control Tooling

Guarantee accurate data extraction using a quality control tool that presents a side-to-side view of imaged documents versus the discrete data elements, ensuring quality of the extraction process and reducing overall extraction errors.

Quality Assurance Curation

Transformed data is translated into actionable, curated information via experienced genomic curators, ensuring the key information is identified.

Biomarker Parsing and Normalization

Extract and standardize molecular biomarkers from a variety of structured and unstructured data sources across all omic modalities (e.g, NGS, IHC, FISH) to facilitate consistent and meaningful analysis.

Expert in the Loop Model

Our natural language processing ecosystem leverages subject matter experts as part of the data extraction and validation workflow to maximize efficiency and accuracy, while minimizing cost and turnaround time.

Document Structure Detection

GenomOncology identifies page formatting elements such as sections, headers, paragraphs, and tables to ensure understanding of semantic flow of text within complex document structures, as those found in NGS and pathology reports.

Structured Data Output

Integrate converted, curated data directly into your existing systems, or a licensed GenomOncology front-end solution, for enhanced data analysis.

Metrics Dashboard

Access a robust dashboard of performance metrics, including turnaround time and extraction accuracy.

System Security

Integrate extracted, curated data directly into your existing systems, or a licensed GenomOncology precision oncology solution, for enhanced data analysis.

Named Entity Linking

GenomOncology extracts structured knowledge (i.e. entities) of a variety of clinically relevant data types such as disease indication, staging, anatomic site, etc. We then link those recognized entities to ontologies to ensure semantic interoperability.

Make Use of All Patient Data

Extract Bulk Data

Extract data in bulk from PDF documents and images in order to recover old and new patient data for data evaluation and investigation.

Curated Insights

All converted data is curated by genomics experts in order to provide accurate, relevant information that can be utilized for developing patient treatment plans, submitting data to cancer registries, or deeper analysis in your precision oncology program.

Reduce Extraction Overhead

A flexible solution that reduces the overall effort associated with converting unstructured data into actionable insights.

Frequently Asked Questions

What problem does this tool solve?

About 80% of medical data is stored in an unstructured format.

Data stored in PDF Documents such as NGS, Surgical Pathology, and Radiology reports contains critical input data for precision medicine-based, Clinical Decision Support (CDS) tools that identify therapies and clinical trials for cancer patients.

Extracting this information in a timely and cost-effective manner is critical to successful precision medicine programs.

What exactly does the tool do?

igniteIQ is a software platform for extracting clinically-relevant information from unstructured and semi-structured documents. This software platform is available as a subscription program that includes both a service offering and licensed software product. Our service offering provides near real-time and bulk data extraction reviewed by our Subject Matter Expert team. The license allows clients to integrate our software into their back-office systems and workflows.

Is this an NLP tool?

This is an “Information Extraction Platform” that blends humans, rules and deep learning models to effectively and efficiently extract structured, clinically-relevant, biomedical data at scale. It leverages technology to augment human curation for improved efficiency and quality. It leverages human expertise to improve the automated extraction of data with rules.

How does pricing and licensing work?

Pricing and licensing are factors of the use case being addressed, the turnaround time, the required level of accuracy, and the number of documents being processed.